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2020


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Sampling on networks: estimating spectral centrality measures and their impact in evaluating other relevant network measures

Ruggeri, N., De Bacco, C.

Applied Network Science, 5:81, October 2020 (article)

Abstract
We perform an extensive analysis of how sampling impacts the estimate of several relevant network measures. In particular, we focus on how a sampling strategy optimized to recover a particular spectral centrality measure impacts other topological quantities. Our goal is on one hand to extend the analysis of the behavior of TCEC [Ruggeri2019], a theoretically-grounded sampling method for eigenvector centrality estimation. On the other hand, to demonstrate more broadly how sampling can impact the estimation of relevant network properties like centrality measures different than the one aimed at optimizing, community structure and node attribute distribution. Finally, we adapt the theoretical framework behind TCEC for the case of PageRank centrality and propose a sampling algorithm aimed at optimizing its estimation. We show that, while the theoretical derivation can be suitably adapted to cover this case, the resulting algorithm suffers of a high computational complexity that requires further approximations compared to the eigenvector centrality case.

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Code Preprint pdf DOI [BibTex]


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Optimal transport for multi-commodity routing on networks

Lonardi, A., Facca, E., Putti, M., De Bacco, C.

October 2020 (article) Submitted

Abstract
We present a model for finding optimal multi-commodity flows on networks based on optimal transport theory. The model relies on solving a dynamical system of equations. We prove that its stationary solution is equivalent to the solution of an optimization problem that generalizes the one-commodity framework. In particular, it generalizes previous results in terms of optimality, scaling, and phase transitions obtained in the one-commodity case. Remarkably, for a suitable range of parameters, the optimal topologies have loops. This is radically different to the one-commodity case, where within an analogous parameter range the optimal topologies are trees. This important result is a consequence of the extension of Kirkchoff's law to the multi-commodity case, which enforces the distinction between fluxes of the different commodities. Our results provide new insights into the nature and properties of optimal network topologies. In particular, they show that loops can arise as a consequence of distinguishing different flow types, and complement previous results where loops, in the one-commodity case, were arising as a consequence of imposing dynamical rules to the sources and sinks or when enforcing robustness to damage. Finally, we provide an efficient implementation for each of the two equivalent numerical frameworks, both of which achieve a computational complexity that is more efficient than that of standard optimization methods based on gradient descent. As a result, our model is not merely abstract but can be efficiently applied to large datasets. We give an example of concrete application by studying the network of the Paris metro.

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Code Preprint [BibTex]


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Community detection with node attributes in multilayer networks

Contisciani, M., Power, E. A., De Bacco, C.

Nature Scientific Reports, 10, pages: 15736, September 2020 (article)

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Code Preprint pdf [BibTex]

Code Preprint pdf [BibTex]


Transient coarsening and the motility of optically heated Janus colloids in a binary liquid mixture
Transient coarsening and the motility of optically heated Janus colloids in a binary liquid mixture

Gomez-Solano, J., Roy, S., Araki, T., Dietrich, S., Maciolek, A.

Soft Matter, 16, pages: 8359-8371, Royal Society of Chemistry, August 2020 (article)

Abstract
A gold-capped Janus particle suspended in a near-critical binary liquid mixture can self-propel under illumination. We have immobilized such a particle in a narrow channel and carried out a combined experimental and theoretical study of the non-equilibrium dynamics of a binary solvent around it – lasting from the very moment of switching illumination on until the steady state is reached. In the theoretical study we use both a purely diffusive and a hydrodynamic model, which we solve numerically. Our results demonstrate a remarkable complexity of the time evolution of the concentration field around the colloid. This evolution is governed by the combined effects of the temperature gradient and the wettability, and crucially depends on whether the colloid is free to move or is trapped. For the trapped colloid, all approaches indicate that the early time dynamics is purely diffusive and characterized by composition layers travelling with constant speed from the surface of the colloid into the bulk of the solvent. Subsequently, hydrodynamic effects set in. Anomalously large nonequilibrium fluctuations, which result from the temperature gradient and the vicinity of the critical point of the binary liquid mixture, give rise to strong concentration fluctuations in the solvent and to permanently changing coarsening patterns not observed for a mobile particle. The early time dynamics around initially still Janus colloids produces a force which is able to set the Janus colloid into motion. The propulsion due to this transient dynamics is in the direction opposite to that observed after the steady state is attained.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


Interface-mediated spontaneous symmetry breaking and mutual communication between drops containing chemically active particles
Interface-mediated spontaneous symmetry breaking and mutual communication between drops containing chemically active particles

Singh, D., Domínguez, A., Choudhury, U., Kottapalli, S., Popescu, M., Dietrich, S., Fischer, P.

Nature Communications, 11(2210), May 2020 (article)

Abstract
Symmetry breaking and the emergence of self-organized patterns is the hallmark of com- plexity. Here, we demonstrate that a sessile drop, containing titania powder particles with negligible self-propulsion, exhibits a transition to collective motion leading to self-organized flow patterns. This phenomenology emerges through a novel mechanism involving the interplay between the chemical activity of the photocatalytic particles, which induces Mar- angoni stresses at the liquid–liquid interface, and the geometrical confinement provided by the drop. The response of the interface to the chemical activity of the particles is the source of a significantly amplified hydrodynamic flow within the drop, which moves the particles. Furthermore, in ensembles of such active drops long-ranged ordering of the flow patterns within the drops is observed. We show that the ordering is dictated by a chemical com- munication between drops, i.e., an alignment of the flow patterns is induced by the gradients of the chemicals emanating from the active particles, rather than by hydrodynamic interactions.

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link (url) DOI [BibTex]


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Axisymmetric spheroidal squirmers and self-diffusiophoretic particles

Pöhnl, R., Popescu, M. N., Uspal, W. E.

Journal of Physics: Condensed Matter, 32(16), IOP Publishing, Bristol, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Tracer diffusion on a crowded random Manhattan lattice

Mej\’\ia-Monasterio, C., Nechaev, S., Oshanin, G., Vasilyev, O.

New Journal of Physics, 22(3), IOP Publishing, Bristol, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Wetting transitions on soft substrates

Napiorkowski, M., Schimmele, L., Dietrich, S.

{EPL}, 129(1), EDP Science, Les-Ulis, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Blessing and Curse: How a Supercapacitor Large Capacitance Causes its Slow Charging

Lian, C., Janssen, M., Liu, H., van Roij, R.

Physical Review Letters, 124(7), American Physical Society, Woodbury, N.Y., 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Interplay of quenching temperature and drift in Brownian dynamics

Khalilian, H., Nejad, M. R., Moghaddam, A. G., Rohwer, C. M.

EPL, 128(6), EDP Science, Les-Ulis, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Fractal-seaweeds type functionalization of graphene

Amsharov, K., Sharapa, D. I., Vasilyev, O. A., Martin, O., Hauke, F., Görling, A., Soni, H., Hirsch, A.

Carbon, 158, pages: 435-448, Elsevier, Amsterdam, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Effective pair interaction of patchy particles in critical fluids

Farahmand Bafi, N., Nowakowski, P., Dietrich, S.

The Journal of Chemical Physics, 152(11), American Institute of Physics, Woodbury, N.Y., 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Cassie-Wenzel transition of a binary liquid mixture on a nanosculptured surface

Singh, S. L., Schimmele, L., Dietrich, S.

Physical Review E, 101(5), American Physical Society, Melville, NY, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Adopting the Boundary Homogenization Approximation from Chemical Kinetics to Motile Chemically Active Particles

Popescu, M. N., Uspal, W. E.

In Chemical Kinetics, pages: 517-540, World Scientific, New Jersey, NJ, 2020 (incollection)

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DOI [BibTex]

DOI [BibTex]


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Network extraction by routing optimization

Baptista, T. D., Leite, D., Facca, E., Putti, M., De Bacco, C.

Nature Scientific Reports , 10, 2020 (article)

Abstract
Routing optimization is a relevant problem in many contexts. Solving directly this type of optimization problem is often computationally unfeasible. Recent studies suggest that one can instead turn this problem into one of solving a dynamical system of equations, which can instead be solved efficiently using numerical methods. This results in enabling the acquisition of optimal network topologies from a variety of routing problems. However, the actual extraction of the solution in terms of a final network topology relies on numerical details which can prevent an accurate investigation of their topological properties. In this context, theoretical results are fully accessible only to an expert audience and ready-to-use implementations for non-experts are rarely available or insufficiently documented. In particular, in this framework, final graph acquisition is a challenging problem in-and-of-itself. Here we introduce a method to extract networks topologies from dynamical equations related to routing optimization under various parameters’ settings. Our method is made of three steps: first, it extracts an optimal trajectory by solving a dynamical system, then it pre-extracts a network and finally, it filters out potential redundancies. Remarkably, we propose a principled model to address the filtering in the last step, and give a quantitative interpretation in terms of a transport-related cost function. This principled filtering can be applied to more general problems such as network extraction from images, thus going beyond the scenarios envisioned in the first step. Overall, this novel algorithm allows practitioners to easily extract optimal network topologies by combining basic tools from numerical methods, optimization and network theory. Thus, we provide an alternative to manual graph extraction which allows a grounded extraction from a large variety of optimal topologies.

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Code Preprint link (url) DOI [BibTex]

Code Preprint link (url) DOI [BibTex]


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Energy storage in steady states under cyclic local energy input

Zhang, Y., Holyst, R., Maciolek, A.

Physical Review E, 101(1), American Physical Society, Melville, NY, 2020 (article)

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DOI [BibTex]

DOI [BibTex]


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Numerical simulations of self-diffusiophoretic colloids at fluid interfaces

Peter, T., Malgaretti, P., Rivas, N., Scagliarini, A., Harting, J., Dietrich, S.

Soft Matter, 16(14):3536-3547, Royal Society of Chemistry, Cambridge, UK, 2020 (article)

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DOI [BibTex]

DOI [BibTex]

2011


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Collective dynamics of colloids at fluid interfaces

Bleibel, J., Dominguez, A., Oettel, M., Dietrich, S.

European Physical Journal E, 34(11), 2011 (article)

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DOI [BibTex]

2011


DOI [BibTex]


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Anomalous transport of a tracer on percolating clusters

Spanner, M., Höfling, F., Schröder-Turk, G. E., Mecke, K., Franosch, T.

Journal of Physics: Condensed Matter, 23(23), 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Dynamics of colloids in confined geometries

Almenar, L., Rauscher, M.

Journal of Physics: Condensed Matter, 23(18), 2011 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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The structure and melting transition of two-dimensional colloidal alloys

Law, A. D., Horozov, T. S., Buzza, D. M. A.

Soft Matter, 7(19):8923-8931, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Second harmonic light scattering from spherical polyelectrolyte brushes

Schürer, B., Hoffmann, M., Wunderlich, S., Harnau, L., Peschel, U., Ballauff, M., Peukert, W.

Journal of Physical Chemistry C, 115, pages: 18302-18309, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Simulation einer fast kritischen binären Flüssigkeit in einem Temperaturgradienten

Single, F.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

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[BibTex]

[BibTex]


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Solvation forces in Ising films with long-range boundary fields: density-matrix renormalization-group study

Drzewinski, A., Maciolek, A., Barasinski, A.

Molecular Physics, 109(7-10):1133-1141, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Pulling and pushing a cargo with a catalytically active carrier

Popescu, M. N., Tasinkevych, M., Dietrich, S.

Europhysics Letters, 95(2), 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Critical Casimir forces for Ising films with variable boundary fields

Vasilyev, O., Maciolek, A., Dietrich, S.

Physical Review E, 84(4), 2011 (article)

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DOI [BibTex]


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Study of \pi\pi correlations at LHC and RHIC energies in pp collisions within the quark-gluon string model

Nilsson, M. S., Bravina, L. V., Zabrodin, E. E., Malinina, L. V., Bleibel, J.

Physical Review D, 84(5), 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Micro-rheology on (polymer-grafted) colloids using optical tweezers

Gutsche, C., Elmahdy, M. M., Kegler, K., Semenov, I., Stangner, T., Otto, O., Ueberschär, O., Keyser, U. F., Krüger, M., Rauscher, M., Weeber, R., Harting, J., Kim, Y. W., Lobaskin, V., Netz, R., Kremer, F.

Journal of Physics: Condensed Matter, 23(18), IOP Publishing, Bristol, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Debye-Scherrer rings from block copolymer films with powder-like order

Busch, P., Rauscher, M., Moulin, J.-F., Müller-Buschbaum, P.

Journal of Applied Crystallography, 44(2):370-379, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Effective interactions and equilibrium configurations of colloidal particles on a sessile droplet

Guzowski, J., Tasinkevych, M., Dietrich, S.

Soft Matter, 7(9):4189-4197, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Capillary interactions in Pickering emulsions

Guzowski, J., Tasinkevych, M., Dietrich, S.

Physical Review E, 84(3), 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Critical Casimir forces steered by patterned substrates

Gambassi, A., Dietrich, S.

Soft Matter, 7(4):1247-1253, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Interaction strength between proteins and polyelectrolyte brushes: A small angle X-ray scattering study

Henzler, K., Haupt, B., Rosenfeldt, S., Harnau, L., Narayanan, T., Ballauff, M.

Physical Chemistry Chemical Physics, 13, pages: 17599-17605, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Annealing of single lamella nanoparticles of polyethylene

Rochette, C. N., Rosenfeldt, S., Henzler, K., Polzer, F., Ballauff, M., Tong, Q., Mecking, S., Drechsler, M., Narayanan, T., Harnau, L.

Macromolecules, 44(12):4845-4851, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Struktur dichter ionischer Flüssigkeiten

Dannenmann, O.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

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[BibTex]

[BibTex]


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Trapping colloids near chemical stripes via critical Casimir forces

Tröndle, M., Zvyagolskaya, O., Gambassi, A., Vogt, D., Harnau, L., Bechinger, C., Dietrich, S.

Molecular Physics, 109, pages: 1169-1185, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Electrostatic interactions in critical solvents

Bier, M., Gambassi, A., Oettel, M., Dietrich, S.

Europhysics Letters, 95, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Structural investigation of thin diblock copolymer films using time-of-flight grazing-incidence small-angle neutron scattering

Metwalli, E., Moulin, J.-F., Rauscher, M., Kaune, G., Ruderer, M. A., Van Bürck, U., Haese-Seiller, M., Kampmann, R., Müller-Buschbaum, P.

Journal of Applied Crystallography, 44(1):84-92, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Complexation of beta-lactoglobulin fibrils and sulfated polysaccharides

Jones, O. G., Handschin, S., Adamcik, J., Harnau, L., Bolisetty, S., Mezzenga, R.

Biomacromolecules, 12, pages: 3056-3065, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Parallelisierung Stokesscher Dynamik für Graphikprozessoren zur Simulation kolloidaler Suspensionen

Kopp, M.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

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[BibTex]

[BibTex]


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Diffusion in Wandnähe

Müller, J.

Universität Stuttgart, Stuttgart, 2011 (mastersthesis)

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[BibTex]

[BibTex]


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Magnetization of multicomponent ferrofluids

Szalai, I., Dietrich, S.

Journal of Physics: Condensed Matter, 23(32), 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Space-resolved dynamics of a tracer in a disordered solid

Franosch, T., Spanner, M., Bauer, T., Schröder-Turk, G. E., Höfling, F.

Journal of Non-Crystalline Solids, 357(2):472-478, 2011 (article)

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DOI [BibTex]

DOI [BibTex]


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Long-wavelength anomalies in the asymptotic behavior of mode-coupling theory

Schnyder, S. K., Höfling, F., Franosch, T., Voigtmann, T.

Journal of Physics: Condensed Matter, 23(23), 2011 (article)

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DOI [BibTex]

DOI [BibTex]