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2012


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Kernel Mean Embeddings of POMDPs

Nishiyama, Y., Boularias, A., Gretton, A., Fukumizu, K.

21st Machine Learning Summer School , 2012 (poster)

ei

[BibTex]

2012


[BibTex]


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Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis

Windram, O., Madhou, P., McHattie, S., Hill, C., Hickman, R., Cooke, E., Jenkins, DJ., Penfold, CA., Baxter, Ll., Breeze, E., Kiddle, SJ., Rhodes, J., Atwell, S., Kliebenstein, D., Kim, Y-S., Stegle, O., Borgwardt, KM., others

The Plant Cell Online, 24(9):3530-3557, 2012, all authors: Oliver Windram,Priyadharshini Madhou,Stuart McHattie,Claire Hill,Richard Hickman,Emma Cooke,Dafyd J. Jenkins,Christopher A. Penfold,Laura Baxter,Emily Breeze,Steven J. Kiddle,Johanna Rhodes,Susanna Atwell,Daniel J. (article)

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Improved Linear Mixed Models for Genome-Wide Association Studies

Listgarten, J., Lippert, C., Kadie, CM., Davidson, RI., Eskin, E., Heckerman, D.

Nature Methods, 9, pages: 525–526, 2012 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Calibration of Boltzmann distribution priors in Bayesian data analysis

Mechelke, M., Habeck, M.

Physical Review E, 86(6):066705, 2012 (article)

ei

DOI [BibTex]

DOI [BibTex]


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CSB: A Python framework for computational structural biology

Kalev, I., Mechelke, M., Kopec, K., Holder, T., Carstens, S., Habeck, M.

Bioinformatics, 28(22):2996-2997, 2012 (article)

Abstract
Summary: Computational Structural Biology Toolbox (CSB) is a cross-platform Python class library for reading, storing and analyzing biomolecular structures with rich support for statistical analyses. CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice. Availability: Stable release packages are available for download from the Python Package Index (PyPI), as well as from the project’s web site http://csb.codeplex.com.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Semi-Supervised Domain Adaptation with Copulas

Lopez-Paz, D., Hernandez-Lobato, J., Schölkopf, B.

Neural Information Processing Systems (NIPS), 2012 (poster)

ei

PDF [BibTex]

PDF [BibTex]


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Therapy monitoring of patients with chronic sclerodermic graft-versus-host-disease using PET/MRI

Sauter, A., Schmidt, H., Mantlik, F., Kolb, A., Federmann, B., Bethge, W., Reimold, M., Pfannenberg, C., Pichler, B., Horger, M.

2012 SNM Annual Meeting, 2012 (poster)

ei

Web [BibTex]

Web [BibTex]


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Significant global reduction of carbon uptake by water-cycle driven extreme vegetation anomalies

Zscheischler, J., Mahecha, M., von Buttlar, J., Harmeling, S., Jung, M., Randerson, J., Reichstein, M.

Nature Geoscience, 2012 (article) In revision

ei

[BibTex]

[BibTex]


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The PET Performance Measurements of A Next Generation Dedicated Small Animal PET/MR Scanner

Liu, C., Hossain, M., Bezrukov, I., Wehrl, H., Kolb, A., Judenhofer, M., Pichler, B.

World Molecular Imaging Congress (WMIC), 2012 (poster)

ei

[BibTex]

[BibTex]


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Evaluation of Whole-Body MR-Based Attenuation Correction in Bone and Soft Tissue Lesions

Bezrukov, I., Mantlik, F., Schmidt, H., Schwenzer, N., Brendle, C., Schölkopf, B., Pichler, B.

Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC), 2012 (poster)

ei

[BibTex]

[BibTex]


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Design of a Haptic Interface for a Gastrointestinal Endoscopy Simulation

Yu, S., Woo, H. S., Son, H. I., Ahn, W., Jung, H., Lee, D. Y., Yi, S. Y.

Advanced Robotics, 26(18):2115-2143, 2012 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Measurement and calibration of noise bias in weak lensing galaxy shape estimation

Kacprzak, T., Zuntz, J., Rowe, B., Bridle, S., Refregier, A., Amara, A., Voigt, L., Hirsch, M.

Monthly Notices of the Royal Astronomical Society, 427(4):2711-2722, Oxford University Press, 2012 (article)

ei

DOI [BibTex]

DOI [BibTex]


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From Dynamic Movement Primitives to Associative Skill Memories

Pastor, P., Kalakrishnan, M., Meier, F., Stulp, F., Buchli, J., Theodorou, E., Schaal, S.

Robotics and Autonomous Systems, 2012 (article)

am

Project Page [BibTex]

Project Page [BibTex]


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Structure and aggregation of colloids immersed in critical solvents

Mohry, T. F., Maciolek, A., Dietrich, S.

Journal of Chemical Physics, 136(22), 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Ewald sum for hydrodynamic interactions with periodicity in two dimensions

Bleibel, J.

Journal of Physics A: Mathematical and Theoretical, 45(22), 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Patchy worm-like micelles: solution structure studied by small-angle neutron scattering

Rosenfeldt, S., Luedel, F., Schulreich, C., Hellweg, T., Radulescu, A., Schmelz, J., Schmalz, H., Harnau, L.

Physical Chemistry Chemical Physics, 14, pages: 12750-12756, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Time correlations and persistence probability of a Brownian particle in a shear flow

Chakraborty, D.

European Physical Journal B, 85(8), Springer-Verlag Heidelberg, Heidelberg, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Image analysis for cosmology: results from the GREAT10 Galaxy Challenge

Kitching, T. D., Balan, S. T., Bridle, S., Cantale, N., Courbin, F., Eifler, T., Gentile, M., Gill, M. S. S., Harmeling, S., Heymans, C., others,

Monthly Notices of the Royal Astronomical Society, 423(4):3163-3208, Oxford University Press, 2012 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Local theory for ions in binary liquid mixtures

Bier, M., Gambassi, A., Dietrich, S.

The Journal of Chemical Physics, 137(3), American Institute of Physics, Woodbury, N.Y., 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Effect of ions on confined near-critical binary aqueous mixture

Pousaneh, F., Ciach, A., Maciolek, A.

Soft Matter, 8(29):7567-7581, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Surface integration approach: a new technique for evaluating geometry dependent forces between objects of various geometry and a plate

Dantchev, D., Valchev, G.

Journal of Colloid and Interface Science, 372(1):148-163, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


Fourier-transform photocurrent spectroscopy using a supercontinuum light source
Fourier-transform photocurrent spectroscopy using a supercontinuum light source

Petermann, C., Beigang, R., Fischer, P.

APPLIED PHYSICS LETTERS, 100(6), 2012 (article)

Abstract
We demonstrate an implementation of frequency-encoded photocurrent spectroscopy using a super-continuum light source. The spectrally broad light is spatially dispersed and modulated with a special mechanical chopper design that permits a continuous wavelength-dependent modulation. After recombination, the light beam contains a frequency encoded spectrum which enables us to map the spectral response of a given sample in 60 ms and with a lateral resolution of 10 mu m. (C) 2012 American Institute of Physics.

pf

DOI [BibTex]

DOI [BibTex]


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Tail-assisted pitch control in lizards, robots and dinosaurs

Libby, T., Moore, T., Chang, E., Li, D., Cohen, D., Jusufi, A., Full, R.

Nature, 2012 (article)

bio

link (url) [BibTex]

link (url) [BibTex]


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Stability of thin wetting films on chemically nanostructured surfaces

Checco, A., Ocko, B. M., Tasinkevych, M., Dietrich, S.

Physical Review Letters, 109(16), American Physical Society., Woodbury, N.Y., etc., 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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The structure of fluids with impurities

Bier, M., Harnau, L.

Zeitschrift f\"ur physikalische Chemie, 226(7-8):807-814, Akademische Verlagsgesellschaft, Frankfurt am Main, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Stepwise swelling of a thin film of lamellae-forming poly(styrene-b-butadiene) in cyclohexane vapor

Di, Zhenyu, Posselt, Dorthe, Smilgies, Detlef-M., Li, Ruipeng, Rauscher, Markus, Potemkin, Igor I., Papadakis, Christine M.

Macromolecules, 45(12):5185-5195, 2012 (article)

icm

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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A close look at proteins: submolecular resolution of two- and three-dimensionally folded cytochrome c at surfaces

Deng, Z., Thontasen, N., Malinowski, N., Rinke, G., Harnau, L., Rauschenbach, S., Kern, K.

Nano Letters, 12, pages: 2452-2458, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Field-induced breakup of emulsion droplets stabilized by colloidal particles

Kim, E. G., Stratford, K., Clegg, P. S., Cates, M. E.

Physical Review E, 85(2), 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


Eine neue Form von Cavity Enhanced Absorption Spectroscopy
Eine neue Form von Cavity Enhanced Absorption Spectroscopy

Petermann, C., Fischer, P.

DE Gruyter, 79(1), 2012, Best paper award OPTO 2011 (article)

Abstract
Wir stellen eine Kopplungsmethode für resonatorgestützte Absorptionsmessungen vor, bei der Licht durch einen im Resonator platzierten akustooptischen Modulator aktiv ein- und ausgekoppelt wird. Dies ermöglicht es Cavity-Ring-Down-Spektroskopie (CRDS) mit breitbandigen und zeitlich inkohärenten Lichtquellen niedriger spektraler Leistungsdichte durchzuführen. Das Verfahren wird zum ersten Mal mit einer breitbandigen Superkontinuum-Quelle demonstriert.

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A new coupling scheme for cavity enhanced absorption spectroscopy makes use of an intracavity acousto-optical modulator to actively switch light into (and out of) a resonator. This allows cavity ringdown spectroscopy (CRDS) to be implemented with broadband temporally incoherent light sources with low spectral power densities. The method is demonstrated for the first time using a broadband supercontinuum source. Best paper award OPTO 2011.

pf

link (url) [BibTex]

link (url) [BibTex]


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Rapid Inversion: Running Animals and Robots Swing like a Pendulum under Ledges

Mongeau, J., McRae, B., Jusufi, A., Birkmeyer, P., Hoover, A., Fearing, R.

PLoS One, 2012 (article)

bio

link (url) [BibTex]

link (url) [BibTex]


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Precursor films in wetting phenomena

Popescu, M. N., Oshanin, G., Dietrich, S., Cazabat, A. M.

Journal of Physics: Condensed Matter, 24, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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First passages in bounded domains: When is the mean first passage time meaningful?

Mattos, Thiago G., Mejia-Monasterio, Carlos, Metzler, Ralf, Oshanin, Gleb

Physical Review E, 86(3), Published by the American Physical Society through the American Institute of Physics, Melville, NY, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Gelation, phase behavior, and dynamics of beta-lactoglobulin amyloid fibrils at varying concentrations and ionic strengths

Bolisetty, S., Harnau, L., Jung, J., Mezzenga, R.

Biomacromolecules, 13, pages: 3241-3252, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Interactions of distinct quadrupolar nematic colloids

Eskandari, Z., Silvestre, N. M., Tasinkevych, M., Telo da Gama, M. M.

Soft Matter, 8(39):10100-10106, Royal Society of Chemistry, Cambridge, UK, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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First SN Discoveries from the Dark Energy Survey

Abbott, T., Abdalla, F., Achitouv, I., Ahn, E., Aldering, G., Allam, S., Alonso, D., Amara, A., Annis, J., Antonik, M., others,

The Astronomer's Telegram, 4668, pages: 1, 2012 (article)

ei

[BibTex]

[BibTex]


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Transport of cargo by catalytic Janus micro-motors

Baraban, L., Tasinkevych, M., Popescu, M. N., Sanchez, S., Dietrich, S., Schmidt, O. G.

Soft Matter, 8(1):48-52, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Mesoscopic analysis of Gibbs’criterion for sessile nanodroplets on trapezoidal substrates

Dutka, F., Napiorkowski, M., Dietrich, S.

Journal of Chemical Physics, 136(6), 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Complete wetting of elastically responsive substrates

Bernardino, N. R., Dietrich, S.

Physical Review E, 85(5), 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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GPU-accelerated simulation of colloidal suspensions with direct hydrodynamic interactions

Kopp, M., Höfling, F.

The European Physical Journal - Special Topics, 210(1):101-117, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Liquid crystal boojum-colloids

Tasinkevych, M., Silvestre, N. M., da Gama, M. M. Telo

New Journal of Physics, 14, Institute of Physics Pub., Bristol, UK, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Crystalline inverted membrane grown on surfaces by electrospray ion beam deposition in vacuum

Rauschenbach, S., Rinke, G., Malinowski, N., Weitz, R., Dinnebier, R., Thontasen, N., Deng, Z., Lutz, T., Rollo, P., Costantini, G., Harnau, L., Kern, K.

Advanced Materials, 24, pages: 2761-2767, 2012 (article)

icm

DOI [BibTex]

DOI [BibTex]


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A sensorimotor paradigm for Bayesian model selection

Genewein, T, Braun, DA

Frontiers in Human Neuroscience, 6(291):1-16, October 2012 (article)

Abstract
Sensorimotor control is thought to rely on predictive internal models in order to cope efficiently with uncertain environments. Recently, it has been shown that humans not only learn different internal models for different tasks, but that they also extract common structure between tasks. This raises the question of how the motor system selects between different structures or models, when each model can be associated with a range of different task-specific parameters. Here we design a sensorimotor task that requires subjects to compensate visuomotor shifts in a three-dimensional virtual reality setup, where one of the dimensions can be mapped to a model variable and the other dimension to the parameter variable. By introducing probe trials that are neutral in the parameter dimension, we can directly test for model selection. We found that model selection procedures based on Bayesian statistics provided a better explanation for subjects’ choice behavior than simple non-probabilistic heuristics. Our experimental design lends itself to the general study of model selection in a sensorimotor context as it allows to separately query model and parameter variables from subjects.

ei

DOI [BibTex]

DOI [BibTex]


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Two-dimensional autonomous microparticle manipulation strategies for magnetic microrobots in fluidic environments

Pawashe, C., Floyd, S., Diller, E., Sitti, M.

IEEE Transactions on Robotics, 28(2):467-477, IEEE, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Variants of guided self-organization for robot control

Martius, G., Herrmann, J.

Theory in Biosci., 131(3):129-137, Springer Berlin / Heidelberg, 2012 (article)

al

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Vortex dynamics in nonparabolic potentials

Langner, H. H., Kamionka, T., Martens, M., Weigand, M., Adolff, C. F., Merkt, U., Meier, G.

{Physical Review B}, 85(17), 2012 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Micromagnetic simulations on GPU, a case study: Vortex core switcing by high-frequency magnetic fields

Van de Wiele, B, Vansteenkiste, A., Kammerer, M., Van Waeyenberge, B., Dupré, L., De Zutter, D.

{IEEE Transactions on Magnetics}, 48(6):2068-2072, 2012 (article)

mms

DOI [BibTex]

DOI [BibTex]


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On the energetics of transversal and longitudinal fluctuations of atomic magnetic moments

Dietermann, F., Sandratskii, L. M., Fähnle, M.

{Journal of Magnetism and Magnetic Materials}, 324(18):2693-2695, 2012 (article)

mms

DOI [BibTex]

DOI [BibTex]